PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00034633001
Common NameGSBRNA2T00034633001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 364aa    MW: 40348.9 Da    PI: 5.1247
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00034633001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573121.83.3e-38154242297
               DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 
                          +fqrlw+eeDei++LqG+idfk++tgksp+dd++  y+++kksisf+vsk+q+++Kir+L+kK+ +k+k        sf+k+hdqk++ l
  GSBRNA2T00034633001 154 AFQRLWTEEDEIAVLQGMIDFKKDTGKSPYDDTNVYYDYIKKSISFEVSKNQFMDKIRSLRKKYIGKEKP-------SFTKPHDQKSYRL 236
                          69***************************************************************99876.......************* PP

               DUF573  92 skkiWg 97 
                          ++ iWg
  GSBRNA2T00034633001 237 CQYIWG 242
                          *****9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.3E-30155242IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MSKKRNPLED PPAASSSDEE EVESSAEEEE EEDDNSSSEE EEEDDPKPPP SSSAVTIAVP  60
GKPTATLPAD SESGSETETD SESEPEQPTN KGSGKAVLTA KKDKDTPPPP PVALALPAKS  120
GAKRPSTEGP SKETNSKRVK KDEEKREDSK KPAAFQRLWT EEDEIAVLQG MIDFKKDTGK  180
SPYDDTNVYY DYIKKSISFE VSKNQFMDKI RSLRKKYIGK EKPSFTKPHD QKSYRLCQYI  240
WGPDGMGLES AVKSNGASKK SQKKTKKLDS VKQELSFGAS PNGKTHDWFD NSFLVQGIAG  300
FGVDEHHVKQ RWSLVPVETK KKVEEKLKLL QAKEIEFVLQ KTEVLHEVTT MIAEASKNKP  360
LDI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.119610.0flower| root| seed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013687236.10.0PREDICTED: mediator-associated protein 1
TrEMBLA0A078J6750.0A0A078J675_BRANA; BnaCnng38830D protein
STRINGBra027078.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.15e-80DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]